Grain quality of rice varieties and lines from the National Institute for Agricultural Research (INIA)
Keywords:
Oryza sativa L., cooking quality, milling quality, microsatellite markers, genetic variability
Abstract
Grain quality of rice takes into account milling, cooking, nutritional, and appearance aspects. This work carried out the morphological and molecular characterization of 16 rice materials, with emphasis on grain quality, using microsatellite markers (SSR). Evaluated characters included length, width, and thickness of the grain, percentage of whole grain, percentage of chalky grain, white belly, and apparent amylose content. By principal components association, we found that three factors explained 75% of the total variation. Materials used in this work showed long-grain, intermediate behavior regarding milling quality, while its cooking quality, except for two varieties of Italian origin, showed an amylose composition higher than 20%, in accordance with domestic market requirements. To analyze the genetic variability we used 48 microsatellites previously associated with characteristics of grain quality, finding that only 20 showed polymorphic bands (percentage of polymorphic loci 40%) in these materials, and detecting 43 alleles, with an average number of alleles per marker of 2.26. Molecular data were evaluated by a multiple correspondence analysis finding out that the first three factors explained 70.6% of the total variance, and by cluster analysis using 1-Jaccard distance and Ward average linkage, we obtained the formation of 4 groups. Under the conditions of this study, we could not demonstrate a correlation between quantitative characteristics of grain quality and allelic patterns achieved by SSR
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References
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• Tan, Y. F., J. X. Li, S. B. Yu, Y. Z. Xing and C. G. Xu. 1999. The three important traits for cooking and eating quality of rice grains are controlled by a single locus in an elite rice hybrid Shanyou 63. Theor. Appl. Genet. 99:642-648.
• Temnykh, S., W. D. Park, N. M. Ayres, S. Cartinhour, N. Hauck, L. Lipovich, Y. G. Cho, T. Ishii and S. R. McCouch. 2000. Mapping and genome organization of microsatellite sequences in rice (Oryza sativa L.). Theor. Appl. Genet. 100:697-712.
• Temnykh, S., G. DeClerck, A. Lukashova, L. Lipovich, S. Cartinhour, and S. McCouch. 2001. Computational and experimental analysis of microsatellites in rice (Oryza sativa L. ): frequency, length variation, transposon associations, and genetic marker potential. Genome Research 11:1 441-1 152.
• Thomson, M. J., T. H. Tai, A. M. McClung, X. H. Lai, M. E. Hinga, K. B. Lobos, Y. Xu, C. P. Martinez and S. R. McCouch. 2003. Mapping quantitative trait loci for yield, yield components and morphological traits in an advanced backcross population between Oryza rufipogon and the Oryza sativa cultivar Jefferson". Theor. Appl. Genet. 107:479-493.
• Wang, Z., F. Zheng, G. Shen, J. Gao, D. Snustad, M. Li, L. Zhang and M. Hong. 1995. The amylose content in rice endosperm is related to the post transcriptional regulation of the waxy gene. Plant J. 7:613-622.
• Webb, B. D. 1991. Rice quality and grades. In: Rice Utilization, Volume II. Luh B.S. (Ed.) Van Nostrand Reinhold AVI Book, New York. pp. 89-119.
• Yamanaka, S., I. Nakamura, K. N. Watanabe and Y. Sato. 2004. Identification of SNPs in the waxy gene among glutinous rice cultivars and their evolutionary significance during the domestication process of rice. Theor. Appl. Genet. 108:1 200-1 204.
• Yan, C., G. Liang, F. Chen, X. Li, S. Tang, C. Yi, S. Tian, J. Lu and M. Gu. 2003. Mapping quantitative trait loci associated with rice grain shape based on an indica/japonica backcross population. Yi Chuan Xue Bao 30:711-716.
• Yoshida, S., M. Ikegami, J. Kuze, K. Sawada, Z. Hashimoto, T. Ishii, C. Nakamura and O. Kamijima. 2002. QTL analysis for the plant and grain characters of sake brewing rice using a doubled haploid population. Breeding Sci. 52:309-371.
• Zhuang, J. Y., Y. Y. Fan, Z. M. Rao, J. L. Wu, Y. W. Xia and K. L. Zheng. 2002. Analysis on additive effects and additive-by-additive epistatic effects of QTLs for yield traits in a recombinant inbred line pop u la t ion of rice. T heor. Appl. Genet . 105:1 137-1 145.
• Aluko, G., C. P. Martinez, J. Tohme, C. Castano, C. Bergman and J. H. Oard. 2004. QTL mapping of grain quality traits from the interspecific cross Oryza sativa x O. glaberrima, Theor. Appl. Gen. 109:630-639.
• Bao, S., H. Corke and M. Sun. 2002. Microsatellites in starch synthesizing genes in relation to starch physicochemical properties in waxy rice (Oryza sativa L.). Theor Appl. Genet.105:898 905.
• Centro Internacional de Agricultura Tropical (CIAT). 1989. Evaluación de la calidad culinaria y molinera del arroz: Guía de estudio. 75 pp.
• Chaudhary, R. C. and D. V. Tran. 2001. Specialty rice of the World: a prologue. In: Chaudhary R.C., D. V. Tran and R. Duffy (Edit.). Specialty rice of the World: Breeding, production and marketing. Science Publishers Inc, Enfield, USA. pp. 3-12.
• Cheng, Z., G. G. Presting, C. R. Buell, R. A Wing and J. Jiang. 2001. High-resolution pachytene chromosome mapping of bacterial artificial chromos omes anchored by genetic markers reveals the centromere location and the distribution of genetic recombination along chromosome 10 of rice. Genetics 157:1.749-1.757.
• Fan, C., X. Yu, Y. Xing, C. Xu, L. Luo and Q. Zhang. 2 00 5. The main effect s, ep is ta tic effect s and environmental interactions of QTL on the cooking and eating quality of rice in a doubled haploid line population. Theor. Appl. Genet. 110:1.445-1.452.
• GRAMENE. 2007. Oryza. Documento en línea. Disponible en: https://bitly/32WZv1U Fecha de consulta: 14/02/2006.
• Gu, X. Y., S. F. Kianian and M. E. Foley. 2004. Multiple loci and epistases control genetic variation for seed dormancy in weedy rice (Oryza sativa). Genetics 166:1.503-1.516.
• Hirano, H. Y. and Y. Sano. 2000. Comparison of Waxy gene regulation in the endosperm and pollen in Oryza sativa L. Genes Genet Syst. 75:245 249.
• Ilarraza, D. 2002. Efectos del genotipo y tiempos de almacenamiento sobre la calidad culinaria de líneas experimentales de arroz (Oryza sativa L). Tesis de pregrado. Universidad Central de Venezuela. Facultad de Agronomía. Maracay Venezuela. 80 pp.
• InfoStat. 2004. InfoStat software Estadístico. Versión 1.1. Universidad de Córdoba, Argentina.
• Jiang, G., X. Hong, C. Xu, X. Li and Y. He. 2005. Identification of quantitative trait loci for grain appearance and milling quality using a doubled haploid rice population. J. of Integrative Plant Biology 47:1 391-1 403.
• Juliano, B. and C. Villareal. 1993. Grain quality evaluation of world rice. International Rice Research Institute (IRRI). Philippines, 205 pp.
• Lanceras, J., Z. Huang, O. Naivikul, A. Vanavichit, V. Ruanjaichon and S. Tragoonrung. 2000. Mapping of genes for cooking and eating qualities in Thai jasmine rice (KDML105). DNA Res. 7:93-101.
• León, J. L. y R. Carreres, 2002. Calidad del arroz: criterios para una adecuada valoración. Vida Rural 145:38-40.
• Livore, A. 2004. Calidad Industrial y culinaria del arroz. Revista IDIA XXI 6:190-194.
• Lu, C. F., L. H. Shen, Z. B. Tan, Y. B. Xu, P. He, Y. Chen and L. H. Zhu. 1997. Comparative mapping of QTLs for agronomic traits of rice across environments by using a doubled haploid population. Theor. Appl. Genet. 94:145-150.
• Martínez, C. P., S. Carabali, M. C. Duque y J. Silva. 2002. Progreso genético para calidad de grano de arroz (Oryza sativa) mediante selección recurrente. In: Mejoramiento poblacional, una alternativa para explorar los recursos genéticos del arroz en América Latina. Guimaraes E.P. (Ed.) Centro Internacional de Agricultura Trop. Cali, Colombia. pp. 296-317.
• Montoya, M., N. Rodríguez, I. Pérez-Almeida, J. Cova y L. Alemán. 2007. Caracterización morfológica de 13 variedades de arroz venezolanas. Agronomía Trop. 57(4):299-311.
• Páez, O. 2004. El Cultivo de arroz en Venezuela. Insti- tuto Nacional de Investigaciones Agrícolas (INIA). Alfredo Romero (Ed.). Serie Manuales de Cultivo INIA Nº 1. Maracay. 202 pp.
• Picca, A., M. Helguera, N. Salomón y A. Carrera, 2004. Marcadores Moleculares. In: Biotecnología y Mejoramiento Vegetal. Parte II. Herramientas básicas. Ediciones INTA. Echenique, V., Rubinstein, C., y L. Mroginski (Eds.). Parte II, Cap. 4 pp. 61 68.
• Septiningsih, E. M., J. Prasetiyono, E. Lubis, T. H. Tai, T. Tjubaryat, S. Moeljopawiro and S. R. McCouch. 2003. Identification of quantitative trait loci for yield and yield components in an advanced backcross population derived from the Oryza sativa variety IR64 and the wild relative O. rufipogon. Theor. Appl. Genet. 107:1.419-1.432.
• Singh, K., T. Ishii, A. Parco, N. Huang, D. S. Brar and G. S. Khush. 1996 . Centromere mapping and orientation of the molecular linkage map of rice (Oryza sativa L.). Proc. Natl. Acad. Sci. 93:6 163-6 168.
• Tan, Y., M. Sun, Y. Xing, J. P. Hua, X. L. Sun, Q. Zhang and H. Corke. 2001. Mapping quantitative trait loci for milling quality, Protein content and color characteristics of rice using a recombinant inbred line population derive from and elite rice hybrid. Theor. Appl. Genet. 103:1 037-1 045.
• Tan, Y. F., J. X. Li, S. B. Yu, Y. Z. Xing and C. G. Xu. 1999. The three important traits for cooking and eating quality of rice grains are controlled by a single locus in an elite rice hybrid Shanyou 63. Theor. Appl. Genet. 99:642-648.
• Temnykh, S., W. D. Park, N. M. Ayres, S. Cartinhour, N. Hauck, L. Lipovich, Y. G. Cho, T. Ishii and S. R. McCouch. 2000. Mapping and genome organization of microsatellite sequences in rice (Oryza sativa L.). Theor. Appl. Genet. 100:697-712.
• Temnykh, S., G. DeClerck, A. Lukashova, L. Lipovich, S. Cartinhour, and S. McCouch. 2001. Computational and experimental analysis of microsatellites in rice (Oryza sativa L. ): frequency, length variation, transposon associations, and genetic marker potential. Genome Research 11:1 441-1 152.
• Thomson, M. J., T. H. Tai, A. M. McClung, X. H. Lai, M. E. Hinga, K. B. Lobos, Y. Xu, C. P. Martinez and S. R. McCouch. 2003. Mapping quantitative trait loci for yield, yield components and morphological traits in an advanced backcross population between Oryza rufipogon and the Oryza sativa cultivar Jefferson". Theor. Appl. Genet. 107:479-493.
• Wang, Z., F. Zheng, G. Shen, J. Gao, D. Snustad, M. Li, L. Zhang and M. Hong. 1995. The amylose content in rice endosperm is related to the post transcriptional regulation of the waxy gene. Plant J. 7:613-622.
• Webb, B. D. 1991. Rice quality and grades. In: Rice Utilization, Volume II. Luh B.S. (Ed.) Van Nostrand Reinhold AVI Book, New York. pp. 89-119.
• Yamanaka, S., I. Nakamura, K. N. Watanabe and Y. Sato. 2004. Identification of SNPs in the waxy gene among glutinous rice cultivars and their evolutionary significance during the domestication process of rice. Theor. Appl. Genet. 108:1 200-1 204.
• Yan, C., G. Liang, F. Chen, X. Li, S. Tang, C. Yi, S. Tian, J. Lu and M. Gu. 2003. Mapping quantitative trait loci associated with rice grain shape based on an indica/japonica backcross population. Yi Chuan Xue Bao 30:711-716.
• Yoshida, S., M. Ikegami, J. Kuze, K. Sawada, Z. Hashimoto, T. Ishii, C. Nakamura and O. Kamijima. 2002. QTL analysis for the plant and grain characters of sake brewing rice using a doubled haploid population. Breeding Sci. 52:309-371.
• Zhuang, J. Y., Y. Y. Fan, Z. M. Rao, J. L. Wu, Y. W. Xia and K. L. Zheng. 2002. Analysis on additive effects and additive-by-additive epistatic effects of QTLs for yield traits in a recombinant inbred line pop u la t ion of rice. T heor. Appl. Genet . 105:1 137-1 145.
Published
2009-12-30
How to Cite
Pérez Almeida, I., & Montoya Aramburu, M. A. (2009). Grain quality of rice varieties and lines from the National Institute for Agricultural Research (INIA). Agronomía Tropical, 59(4), 445-456. Retrieved from http://publicaciones.inia.gob.ve/index.php/agronomiatropical/article/view/409
Section
Original research article
Copyright (c) 2009 Iris Pérez Almeida, María A. Montoya Aramburu
This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.
